I haven't played Human Revolution in a very long time, and I don't remember having that issue, so I can't comment on that. But I'm playing through Mankind Divided and I'd disagree.
If anything, I went around with unspent praxis points for a very long time (9-15 of them) since I never really needed any abilities besides hacking up to level 3 or so. I'm swimming in omnitools and can craft more. I've been saving and reloading to try all the different ways to approach some of the scenarios because there's a lot of flexibility. I've had fun moving heavy objects out of the way by wedging small objects and jiggling them.
I finally have a bunch of abilities, and they mostly feel like extras that make the game more fun, but are definitely not required. I also have way too much of everything.