It was green previously but it also has some type of camouflage tech so that might be where the confusion is coming from. Regardless, I also thought it stood out awkwardly in this particular episode, everything is so monotone but then this pea soup ship is just there.
Didn't like Episode 9 either and I don't have much to say sadly as the flaws are the same as before. Things happen just because(Rapist-Hulk, the Mithraic don't sleep in the shuttle even though we know it gets unbearably cold because Father and Hunter have to steal it, Marcus getting Mother's eyes shoved down his throat and he is also inexplicably not murdered, Paul hears voices so he leaves the cave and burns the metal "Tarot" cards while praising Sol), the Mithraic are still a bunch of nonsense, more mysterious things pushing the mystery quota to even more troubling heights(metal "Tarot", vision from said metal "Tarot", that POV shot of someone watching Mother and the rest).
I just find the whole of everything happening to be so weird. When I was watching the first episode I never thought for a second that things like mysterious voices that only some can hear, cryptic visions, and Rapist-Hulk, would coming down the line.