I mean.
I wouldn't hunt them, or butcher them, much like I don't the normal animals here. But if an industry exists where Pokemon meat is available, I wouldn't necessarily turn my nose up at it.
Even here, in some parts of the world people eat dogs - the closest thing we have to an "intelligent companion creature" (besides cats). And some people keep a lot of the otherwise edible or harvestable animals as pets - horses, turtles, rabbits, lizards, ostriches, etc., and they love them and train them. You wouldn't catch me dead eating horse meat, for instance (even though it's sold around here), but aside from how hard or expensive they are to get the other kinds of meat I'm open to trying - I just have no particular attachment to those species of animals. If I were living in the Pokeverse, saw some Pokemeat on sale, and the Pokemon in question wasn't particularly appealing to me, I wouldn't think much of it either.